Bm. Fangan et al., A GENERAL-APPROACH FOR PCR-AMPLIFICATION AND SEQUENCING OF CHLOROPLAST DNA FROM CRUDE VASCULAR PLANT AND ALGAL TISSUE, BioTechniques, 16(3), 1994, pp. 484
A universal and reliable sequencing approach suitable for evolutionary
and phylogenetic studies of most plant species has been developed. Th
e initial step in the approach is PCR with primers from conserved regi
ons in the chloroplast genome. Prior to PCR a simple DNA extraction is
carried out where lysed tissue is embedded in agarose and dialyzed. D
ue to the use of one biotinylated primer in the PCR, the PCR products
can be bound to magnetic streptavidin-coated beads and then sequenced
directly by the solid-phase approach. The regions used for sequencing
and subsequent analyses are the intron of the trnL gene and the interg
enic spacer between. the trnL and the trnF genes in the chloroplast DN
A. Comparisons of the sequences obtained from closely and distantly re
lated species show that the different chloroplast DNA regions harbor v
ariations suitable for phylogenetic inference from the subspecific to
the interfamiliar level. The strategy can be used both for manual and
automated sequencing.