A number of stably transformed wheat cell lines were obtained using tw
o different direct gene transfer techniques. When integration of the f
oreign genes was investigated in DNA samples taken at 10 months post-s
election, complicated profiles of transgene bands were observed in Sou
thern blot analysis. Among these, a number of common bands were identi
fied showing similar hybridization patterns between independently tran
sformed cell lines. This type of hybridization pattern has been a comm
on observation and is usually interpreted as concatameric rearrangemen
t of integrated DNA. However, when integration was reinvestigated with
DNA samples taken at 30 months postselection, the hybridization patte
rn changed and most of the common bands had disappeared. Further analy
sis using a set of methylation-sensitive enzymes revealed that the DNA
represented by the common bands was N-6-adenine methylated ((m6)A DNA
), and there was even (m6)A DNA in some 30 month samples. Although the
source of (m6)A DNA in the wheat cultures was not clearly established
, the data indicate that transformation of an endophyte (e.g. a mycopl
asmalike organism) may have occurred at the same time as the transform
ation of wheat cells. The integration pattern of undermethylated trans
genes in the transformed cells became simpler and clearer after treati
ng the DNA preparations with Dpnl, which only cuts (m6)A DNA. The impl
ications of these data for other methods of inoculating cereals with D
NA are discussed.