Jw. Cheng et al., N-15 NMR RELAXATION STUDIES OF THE FK506 BINDING-PROTEIN - DYNAMIC EFFECTS OF LIGAND-BINDING AND IMPLICATIONS FOR CALCINEURIN RECOGNITION, Biochemistry, 33(14), 1994, pp. 4093-4100
Backbone dynamics of the ligand- (FK506-) bound protein FKBP- 12 (107
amino acids) have been examined using N-15 relaxation data derived fro
m inverse-detected two-dimensional H-1-N-15 NMR spectra. A model free
formalism [Lipari & Szabo (1982) J. Am. Chem. Soc. 104, 4546-45591 was
used to derive the generalized order parameter (S2), the effective co
rrelation time for internal motions (tau(e)), and the chemical-exchang
e line width (R(ex)) based on the measured 15N relaxation rate constan
ts (R1, R2) and H-1-N-15 heteronuclear NOEs. The final optimized overa
ll correlation time (tau(m)) was 9.0 ns. The average order parameter (
S2) describing the amplitude of motions on the picosecond time scale w
as found to be 0.88 +/- 0.04, indicating that internal flexibility is
restricted along the entire polypeptide chain. In contrast to results
obtained for uncomplexed FKBP, the 80's loop (residues 82-87) surround
ing the ligand binding site was found to be rigidly fixed, indicating
that internal motions at this site are damped significantly due to sta
bilizing noncovalent interactions with the FK506 molecule. Structural
implications of these differences in picosecond mobility as well as po
ssible implications for calcineurin recognition are discussed.