The trp repressor of Escherichia coli (TR), although generally conside
red to be dimeric, has been shown by fluorescence anisotropy of extrin
sically labeled protein to undergo oligomerization in solution at prot
ein concentrations in the micromolar range (Fernando, T., and C. A. Ro
yer 1992. Biochemistry. 31:3429-3441). Providing evidence that oligome
rization is an intrinsic property of TR, the present studies using che
mical cross-linking, analytical ultracentrifugation, and molecular sie
ve chromatography demonstrate that unmodified TR dimers form higher or
der aggregates. Tetramers and higher order species were observed in ch
emical cross-linking experiments at concentrations between 1 and 40 mu
M. Results from analytical ultracentrifugation and gel filtration chr
omatography were consistent with average molecular weight values betwe
en tetramer and dimer, although no plateaus in the association were ev
ident over the concentration ranges studied, indicating that higher or
der species are populated. Analytical ultracentrifugation data in pres
ence of corepressor imply that corepressor binding destabilizes the hi
gher order aggregates, an observation that is consistent with the earl
ier fluorescence work. Through the investigation of the salt and pH de
pendence of oligomerization, the present studies have revealed an elec
trostatic component to the interactions between TR dimers.