A structure-activity relationship of low molecular weight dermatan sul
fate was undertaken to understand better this new non-heparin, glycosa
minoglycan-based antithrombotic agent. A dermatan sulfate prepared fro
m bovine intestinal mucosa [average molecular weight (MWavg) 25,000],
and currently in clinical trials as an antithrombotic agent, was used
in this study. Dermatan sulfate was partially depolymerized using hydr
ogen peroxide and copper(II) as catalyst to MWavg 5600 to obtain a low
molecular weight dermatan sulfate. This low molecular weight dermatan
sulfate was then fractionated by gel permeation chromatography to obt
ain four subfractions having MWavg 7800, 5500, 4200 and 1950. The derm
atan sulfate, low molecular weight dermatan sulfate and its subfractio
ns showed substantially different optical rotations. The H-1-NMR spect
roscopic analysis of dermatan sulfate samples showed some differences
including increased content of GalpNAc4S6S residues and improved resol
ution in ring resonances for low molecular weight dermatan sulfate fra
ctions, primarily the result of reduced molecular weight and lowered h
eterogeneity. Saccharide compositional analysis relied on chondroitin
ABC lyase treatment followed by capillary electrophoresis. Polyacrylam
ide gel-based oligosaccharide mapping was also performed by treating d
ermatan sulfate samples with chondroitin B, AC and ABC lysases. These
analyses showed increased amounts of sulfation as the MWavg decreased.
In vitro bioassay showed maximum anti-Xa activity in the 4.2 kDa frac
tion and maximum heparin cofactor II-mediated anti-IIa activity in the
5.5 kDa fraction. The in vivo antithrombotic activity of these fracti
ons was measured using a modified Wessler stasis thrombosis model. The
4.2 kDa fraction showed greater antithrombotic activity than the othe
r low molecular weight dermatan sulfate fractions, dermatan sulfate, a
nd low molecular weight dermatan sulfate. This enhanced activity may r
esult from several structural features of the 4.2 kDa fraction includi
ng: a high content of 4,6- and 2,4-disulfated disaccharide sequences;
the requirement of specific chain length; a change in the ratio of idu
ronic to glucuronic acid; and the presence of chondroitin ABC lyase re
sistant material.