The association between myasthenia gravis (MG) and TAP polymorphisms w
as studied in 79 Swedish patients and 155 unrelated controls. TAP typi
ng was performed by ARMS-PCR technique and stratification analysis was
used to determine if the TAP associations were independent or seconda
ry to linkage disequilibrium with DQ2 and DR3. TAP1 and TAP2 alleles d
id not confer independent risk for MG. TAP20101 was, however, positiv
ely associated with MG in patients with an early onset of disease comp
ared to patients with a late onset of disease. TAP1 and TAP2 alleles d
id not confer risk in MG patients negative for DQ2. In conclusion, sus
ceptibility to MG is not primarily conferred by TAP alleles in the ext
ended DR3 haplotype.