ARBP (attachment region binding protein) is an abundant nuclear protei
n that specifically binds to matrix/scaffold attachment regions (MARs/
SARs). Here we show by gel filtration and gradient sedimentation that
ARBP has an elongated shape. The sedimentation coefficient was determi
ned as only 2.1 S. Furthermore, limited proteolysis of ARBP in situ (i
n isolated nuclei) with several proteases generated limiting resistant
peptides from 14.5 to 18 kDa, that retained the ability to bind MARs
specifically. This indicates that these peptides encompass the DNA bin
ding domain of ARBP.