Eighty-five wild and cultivated accessions of common bean (Phaseolus v
ulgaris L.), representing a wide geographic area in the centres of dom
estication were tested for restriction fragment length polymorphisms (
RFLPs). Genomic DNA was digested with one of three restriction enzymes
(EcoRI, EcoRV, and HindIII) and hybridized to 12 probes distributed t
hroughout the common bean genome. Accessions could be classified into
two major groups with a distinct geographical distribution in Middle A
merica and the Andes. Within each gene pool, cultivated accessions clu
stered together with wild forms from the same geographical area suppor
ting the multiple domestications hypothesis for this crop. Estimates o
f Nei's genetic distances among the cultivated races from the two diff
erent gene pools varied from 0.12 to 0.56 and among races from the sam
e gene pool from 0.04 to 0.12, suggesting that the divergence in Phase
olus vulgaris has reached the subspecies level. The level of genetic d
iversity (H-t = 0.38) was twice the value obtained with isozyme analys
is. Genetic diversity within races (H-s = 0.27) was four to five times
higher compared with isozymes, but genetic diversity between races (D
-st = 0.11) was similar for both categories of markers. These results
corroborate previous studies on the characterization of genetic divers
ity in common bean that clearly showed two distinct gene pools, Middle
American and Andean. Moreover, RFLP markers are superior to isozymes
because they provide better coverage of the genome and reveal higher l
evel of polymorphisms.