The organization of the nuclear-encoded 18S, 5.8S, and 25S ribosomal R
NA genes (ribosomal DNA; rDNA) of 21 New World species from different
sections of the genus Solanum, of two Old World Solanum species, and o
f representatives of other Solanaceae (Nicotiana, Atropa, Datura, Phys
alis, and Capsicum) was analyzed by restriction enzyme mapping using d
ifferent rDNA specific hybridization probes. All Solanum species inves
tigated exhibited rDNA repeats between 8.7 and 9.3 kb in length; the o
nly exception was S. neorossii with a repeat length of 10.3 kb. Sequen
ce heterogeneity was observed mostly in the intergenic spacer (IGS) re
gion. Restriction sites for EcoRI and DraI in the spacer sequences wer
e found to be characteristic for the New World species of the genus So
lanum and for Lycopersicon esculentum. An additional XbaI site was det
ected in the spacer region of two nontuber-bearing species, S. brevide
ns and S. etuberosum (subsection Estolonifera Hawkes; series Etuberosa
), as well as in the primitive tuber-bearing species of the series Pin
natisecta and Polyadenia (subsection Potatoe G.Don), thus demonstratin
g that these Mexican species are separated from the other tuber-bearin
g species but are closely linked to the nontuber-bearing Estolonifera
group. Two EcoRI sites mapped at the 3' end of the 25S rRNA coding reg
ion seem to be characteristic for members of the Solanaceae; the first
EcoRI site is apparently methylated in approximately 50% of the rDNA
repeats. Southern hybridization with an IGS fragment of Solanum tubero
sum as hybridization probe and nucleotide sequence analysis of the phy
logenetically informative 3' end of the 25S rDNA support the assumptio
n that the New World species of the genus Solanum are closely related
to Lycopersicon (tomato) in contrast with other Solanaceae investigate
d, Nicotiana, Atropa, Datura, Physalis, and Capsicum. Moreover, the Ne
w World potatoes and tomato appear to be more closely related to each
other than potatoes and the Old World species Solanum nigrum and Solan
um dulcamara.