K. Sakamoto et al., THE COMPLETE SEQUENCES OF AFRICAN HORSESICKNESS VIRUS SEROTYPE-4 (VACCINE STRAIN) RNA SEGMENT-2 AND SEGMENT-6 WHICH ENCODE OUTER CAPSID PROTEIN, Journal of veterinary medical science, 56(2), 1994, pp. 321-327
The complete sequences of RNA segment 2 and segment 6 of African horse
sickness virus serotype 4 (AHSV-4) vaccine strain were determined from
cDNA clones inserted into pBR 322. The RNAs of segment 2 and 6 are 32
29, 1566 bp long respectively and both contain an open reading frame e
ncoding proteins VP2 and VP5 of 1060, 505 amino acid residues. The est
imated molecular weight of VP2 was 124,178 dalton and that of VP5 was
56,793 dalton. Their noncoding end sequences were 5'GTTTAA ... and ...
ACATAC3' (segment 2), 5'GTTTAT ... and ... ACTTAC3' (segment 6). They
were different from orbivirus characteristic terminal sequences, whic
h were 5'GTTAAA ... and ... ACTTAC3'. The comparison of both sequences
of AHSV-4 segment 2 and 6 with those of segment 2 and 5 of bluetongue
virus (BTV) serotype 10 revealed 53% nucleotide similarity and 23% am
ino acid similarity (segment 2), and 58% nucleotide similarity and 46%
amino acid similarity (segment 6). In the same way, the comparison of
both sequences of the vaccine strain with those of the virulent strai
n segment 2 and segment 6 of AHSV-4 revealed 91 % nucleotide and 96% a
mino acid similarity (segment 2), and 98% nucleotide and 98% amino aci
d similarity (segment 6).