G. Charmet et al., HIERARCHICAL-CLUSTERING OF PERENNIAL RYEGRASS POPULATIONS WITH GEOGRAPHIC CONTIGUITY CONSTRAINT, Theoretical and Applied Genetics, 88(1), 1994, pp. 42-48
An algorithm of automatic classification is proposed and applied to a
large collection of perennial ryegrass wild populations from France. T
his method is based on an ascendant hierarchical clustering using the
Euclidian distance from the principal components extracted from the va
riance-covariance matrix between 28 agronomic traits. A contiguity con
straint is imposed: only those pairs of populations which are defined
as contiguous are grouped together into a cluster. The definition of c
ontiguity is based on a geostatistical parameter: the range of the var
iogramme, i.e. the largest distance above which the variance between p
airs of population no longer increases. This method yields clusters th
at are generally more compact than those obtained without constraint.
In most cases the contours of these clusters fit well with known ecoge
ographic regions, namely, for macroclimatic homogeneous conditions. Th
is suggests that selective factors exert a major influence in the gene
tic differentiation of ryegrass populations for quantitatively inherit
ed adaptive traits. It is proposed that such a method could provide us
eful genetic and ecogeographic bases for sampling a core collection in
widespread wild species such as forage grasses.