The most common genetic aberration seen in nonpapillary renal cell car
cinoma is believed to be the loss or inactivation of allelic material
on the short arm of chromosome 3 (3p). Two patients underwent nephrect
omy at our institution, each initially receiving a histologic diagnosi
s of renal cell carcinoma. Molecular analysis of these tissues reveale
d no genetic deletion on 3p, prompting further histologic and immunohi
stochemical evaluation of the original specimens. These additional stu
dies confirmed alternate histologies other than renal cell carcinoma i
n each case. These data suggest that the loss of genetic material on t
he short arm of chromosome 3 may be specific for nonpapillary renal ce
ll carcinoma. Molecular analysis may prove to be a useful adjunct in e
stablishing the diagnosis in renal neoplasms with equivocal histologie
s.