Giant primary nuclei of the unicellular green alga Acetabularia contai
n 40 small lampbrush chromosomes which have proved difficult to visual
ize in the light microscope in vivo by conventional fluorescent DNA st
aining techniques. We report here that immunofluorescence staining wit
h the monoclonal anti-phosphoepitope antibody MPM 2 is the method of c
hoice to study the architecture of whole chromosomes within primary nu
clei fixed in situ or after hand isolation. Using confocal laser scann
ing microscopy, we have been able to produce images of Acetabularia la
mpbrush chromosomes of hitherto unsurpassed structural detail. Particu
larly striking is the visualization of abundant loops extending from t
he periaxial chromosome core region for variable distances into the nu
cleoplasm. Staining of the loops can be abolished by pretreatment of i
solated nuclei with alkaline phosphatase, whereas the chromosomal core
remains unaffected. At meiosis, when transcription ceases and the ext
ended chromosomes condense, MPM2 staining is lost indicating that main
tenance of the loops depends on the phosphorylation status of the MPM
2 antigen. Anti-histone antibodies, on the other hand, exclusively sta
in the chromosomal core in the extended lampbrush configuration as wel
l as in the condensed metaphase configuration. This indicates that MPM
2 and anti-histone antibodies recognize different molecular component
s on the chromosomes. We postulate that the loops stained by MPM 2 rep
resent actively transcribing regions of the chromosomes and that the M
PM 2 antigen could be a molecular component involved either in the str
uctural maintenance of the loops or in a process associated with trans
cription.