The gene of human complement factor B (BF) is located within the class
III region of the major histocompatibility complex. The knowledge of
the coding sequence of the BF gene rests on a set of partial sequence
studies reported by various sources, and full-length sequences ascribe
d to specific alleles of this polymorphic complement component have no
t yet been published. Now, we have isolated and sequenced a collection
of cDNA clones derived from BFS, the major BF allele. We present an
uninterrupted, allele-specific sequence of the entire coding region an
d the 3' untranslated segment of the cDNA. Extensive comparison of thi
s and previously available sequence data was carried out, and a number
of base substitutions were observed in relation to some of the earlie
r sequences. The possibility that these differences arise from polymor
phism in the BF gene is discussed.