Plastid chaperonin-60 protein was purified to apparent homogeneity fro
m Brassica napus using a novel protocol. The purified protein, which m
igrated as a single species by nondenaturing polyacrylamide gel electr
ophoresis, contained four polypeptides: three variants of p60(cpn60 al
pha) p60(cpn60 beta). Partial amino acid sequence determination demons
trated that each variant of p60(cpn60 alpha) is a distinct translation
product. During this study, additional chaperonin-60 proteins were pu
rified. These proteins, which were free from contaminating plastid cha
peronin-60, were separated into at least two high molecular weight spe
cies that were resolved only by nondenaturing polyacrylamide gel elect
rophoresis. These proteins contained three 60-kD polypeptides. Two of
these polypeptides were recognized by existing antisera, whereas the t
hird was not. Partial amino acid sequence data revealed that each of t
hese, including the immunologically distinct polypeptide, is a chapero
nin-60 subunit of putative mitochondrial origin. The behavior or chape
ronin-60 proteins during blue A Dyematrex chromatography suggests that
this matrix may be generally useful for the identification of chapero
nin-60 proteins.