The plastid atpB-rbcL intergene has been analyzed within a wide range
of plants covering the major dicot lineages. New sequences from 13 pla
nt species were determined and aligned with three already-known sequen
ces. The promoters of the rbcL and the atpB genes were localized and a
nalyzed according to published observations in spinach and tobacco. Th
e evolutionary conservation of two atpB promoters, separated hv 111-26
2 nucleotides, is strong support that both are functionally active, an
d it also allows a discrimination between the previously reported atpB
transcripts. Moreover, the radically distinct sequences of the two at
pB promoters suggest that they interact with two distinct initiation c
omplexes. The alignment also confirms the much higher conservation of
the leader sequence in the rbcL mRNA than in the atpB mRNA among dicot
s, presuming a function at the posttranscriptional level.