Besides its role in organizing nuclear DNA, the nuclear matrix is invo
lved in specific nuclear functions, including replication, transcripti
on, and RNA splicing. It is becoming increasingly evident that nuclear
processes are localized to distinct regions in the nucleus. For examp
le, transcriptionally active genes and RNA transcripts are found in di
screte transcription foci. Current evidence suggests that nuclear matr
ix-bound transcriptionally active DNA sequences are in nucleosomes wit
h dynamically acetylated histones. Histone acetylation, which precedes
transcription, alters nucleosome and chromatin structure, decondensin
g the chromatin fibre and making the nucleosomal DNA accessible to tra
nscription factors. Histone acetyltransferase and histone deacetylase,
which catalyze this rapid acetylation and deacetylation, are associat
ed with the internal nuclear matrix. We hypothesize that these enzymes
play a role in maintaining the association of the active chromatin do
mains with the internal nuclear matrix at sites of ongoing transcripti
on. (C) 1994 Wiley-Liss, Inc.