Multiwavelength anomalous diffraction (MAD) has been used to determine
the structure of the regulatory enzyme of de novo synthesis of purine
nucleotides, glutamine 5-phosphoribosyl-1-pyrophosphate (PRPP) amidot
ransferase, from Bacillus subtilis. This allosteric enzyme, a 200-kilo
dalton tetramer, is subject to end product regulation by purine nucleo
tides. The metalloenzyme from B. subtilis is a paradigm for the higher
eukaryotic enzymes, which have been refractory to isolation in stable
form. The two folding domains of the polypeptide are correlated with
functional domains for glutamine binding and for transfer of ammonia t
o the substrate PRPP. Eight molecules of the feedback inhibitor adenos
ine monophosphate (AMP) are bound to the tetrameric enzyme in two type
s of binding sites: the PRPP catalytic site of each subunit and an unu
sual regulatory site that is immediately adjacent to each active site
but is between subunits. An oxygen-sensitive [4Fe-4S] cluster in each
subunit is proposed to regulate protein turnover in vivo and is distan
t from the catalytic site. Oxygen sensitivity of the cluster is dimini
shed by AMP, which blocks a channel through the protein to the cluster
. The structure is representative of both glutamine amidotransferases
and phosphoribosyltransferases.