Chloroplast DNA (cpDNA) markers and 12 nuclear (random amplified polym
orphic DNA, or RAPD) markers were used to examine the distribution of
genetic variation among individuals and the genetic and ecological ass
ociations in a hybrid iris population. Plants in the population occurr
ed at various distances from the edge of a bayou in a relatively undis
turbed mixed hardwood forest and in an adjacent pasture dominated by h
erbaceous perennials with interspersed oak and cypress trees. The majo
rity of plants sampled possessed combinations of markers from the diff
erent Iris species. Genetic markers diagnostic for Iris fulva and I. b
revicaulis occurred at high frequencies, whereas markers diagnostic fo
r I. hexagona were infrequent. For the majority of the nuclear markers
, significant levels of cytonuclear disequilibria existed because of i
ntraspecific associations among the markers in both the pasture and th
e forest. The distribution of nuclear markers among individuals was bi
modal; intermediate genotypes were absent and the majority of RAPD mar
kers were associated with their intraspecific cpDNA haplotypes. Strong
intraspecific associations existed among RAPD markers in the forest,
but associations tended to be weaker in the pasture area. Ecological c
orrelations were detected for all but one of the I. fulva and I. brevi
caulis RAPD markers. The ecological associations of hybrids similar to
I. brevicaulis resembled associations of I. brevicaulis parental geno
types, suggesting that these hybrid genotypes may be relatively fit in
the same habitats. The hybrids similar to I. fulva, however, were dis
tributed in habitats that were unique relative to the parental species
. The patterns of genetic and environmental associations along with ot
her available data suggest that (1) only advanced generation hybrids w
ere present in the population; (2) formation of F-1 hybrids among Loui
siana irises is rare, leading to sporadic formation of hybrid populati
ons; and (3) selection and assortative mating have contributed to the
formation of hybrid genotypes that tend to be similar to parental geno
types. The patterns of ecological and genetic associations detected in
this population suggest that assortative mating and environmental and
viability selection are important in the structuring and maintenance
of this hybrid zone.