A high throughput filtration assay was developed and automated for scr
eening compounds and natural product extracts using 96-well filterplat
es. The selection of a hydrophobic membrane and appropriate capture co
nditions enabled us to perform the enzymatic reaction, capture of prod
ucts, vacuum filtration, and detection in a single filtration micropla
te, without any transfer step. The hydrophobic membrane has the advant
age of preventing any loss of aqueous solution during the enzymatic re
action. The results are comparable with those obtained in a solid plat
e format followed by transferring the reaction mixture to a traditiona
l hydrophilic filterplate. This assay is being used to screen for micr
obial RNA polymerase inhibitors as potential new drugs for treatment o
f emerging antibiotic-resistant bacterial and fungal infections. The f
iltration setup can be applied to a variety of assay systems. (C) 1997
Academic Press.