MAPPING COMMON MOLECULAR FRAGMENTS IN CRYSTAL-STRUCTURES TO EXPLORE CONFORMATION AND CONFIGURATION-SPACE UNDER THE CONDITIONS OF A MOLECULAR ENVIRONMENT
G. Klebe, MAPPING COMMON MOLECULAR FRAGMENTS IN CRYSTAL-STRUCTURES TO EXPLORE CONFORMATION AND CONFIGURATION-SPACE UNDER THE CONDITIONS OF A MOLECULAR ENVIRONMENT, Journal of molecular structure. Theochem, 114, 1994, pp. 53-89
Changes of torsion angles and deformations of valence angles, especial
ly in coordination polyhedra, are mainly responsible for the inherent
conformational flexibility of molecules. They allow them to adopt vari
ous shapes and to adapt to the requirements in a particular molecular
environment. The latter aspect makes these systems only tractable by c
omputational methods with an enormous effort. Focusing on common molec
ular fragments imbedded in various environments in crystal structures
allows one to study possible deformations, to elucidate conformational
preferences (low-energy conformations), and to trace conformational i
nterconversions. Large data sets of crystal structures can be analyzed
by means of statistical methods to discover correlations and systemat
ics among the molecular dimensions. In this overview several systems a
re described which show the scope of the approach. Conformational stud
ies of rigid phenyl rotors reveal deviating properties depending on th
e actual constitution of the fragments (Ph-X-Ph, Ph-X-Y-Ph, Ph3X). In
these and in more complex systems like metal phosphine complexes, the
phenyl groups perform various concerted movements related to different
gearing motions of interlocked cog-wheels. Conformational properties
and low-energy conformers of ring systems are accessible from the eval
uation of crystal data. Also larger and unsymmetric systems composed o
f cyclic and open-chain portions can be studied by these methods. Chan
ges of the valence angle relationships at a particular atomic center e
nable molecules to access different areas of conformational space. Pos
sible deformations of coordination geometries, observed in crystal str
uctures, are discussed for examples with three- up to eight-coordinati
on. Interconversion pathways among different coordination geometries c
an be mapped which explain putative reaction pathways or the fluxional
behavior of coordination complexes that are known to occur under solu
tion or gas-phase conditions.