We showed previously that the yeast Prp4 protein is a spliceosomal fac
tor that is tightly associated with the U4, U5, and U6 small nuclear R
NAs. Moreover, Prp4 appears to associate very transiently with the spl
iceosome before the U4 snRNA dissociates from the spliceosome. Prp4 be
longs to the G beta-like protein family, which suggests that the Prp4
G beta motifs could mediate interactions with other components of the
spliceosome. To investigate the function of the G beta motifs, we intr
oduced mutations within the second WD-repeat of Prp4. Among the 35 new
alleles found, 24 were pseudo wild-type mutants, 8 failed to grow at
any temperature, and 3 were conditional sensitive mutants. The biochem
ical defects of the three thermosensitive prp4 mutants have been exami
ned by immunoprecipitation, native gel electrophoresis, and glycerol g
radient centrifugation. First, we show that snRNP formation is not imp
aired in these mutants and that Prp4 is present in the U4/U6 and U4/U6
-U5 snRNP particles. We also demonstrate that spliceosome assembly is
largely unaffected despite the fact that the first step of splicing do
es not occur. However, both Prp4 and U4 snRNA remain tightly associate
d with the spliceosome and this blocks the transition toward an active
form of the spliceosome. Our results suggest a possible role of Prp4
in mediating important conformational rearrangements of proteins withi
n the spliceosome that involve the region containing the G beta-repeat
s.