HPLC, gel chromatography, Northern analysis and non-isotopic in situ h
ybridization have been used to characterize for the first time the nat
ure of vasoactive intestinal polypeptide mRNA and peptide in the rat t
halamus and suprachiasmatic nucleus. Both these hitherto unstudied are
as were shown to contain VIP-like immunoreactivity and VIP mRNA indist
inguishable from those found in the rat cerebral cortex. Non-isotopic
in situ hybridization with an alkaline phosphatase labelled antisense
oligonucleotide specific for VIP mRNA and densitometry revealed that r
elative levels of VIP mRNA per cell were highest in the suprachiasmati
c nucleus and lowest per cell in the thalamus of the rat brain areas i
nvestigated.