We have constructed a genetic map of the mouse genome containing 4,006
simple sequence length polymorphims (SSLPs). The map provides an aver
age spacing of 0.35 centiMorgans (cM) between markers, corresponding t
o about 750 kb. Approximately 90% of the genome lies within 1.1 cM of
a marker and 99% lies within 2.2 cM. The markers have an average polym
orphism rate of 50% in crosses between laboratory strains. The markers
are distributed in a relatively uniform fashion across the genome, al
though some deviations from randomness can be detected. In particular,
there is a significant underrepresentation of markers on the X chromo
some. This map represents the two-thirds point toward our goal of deve
loping a mouse genetic map containing 6,000 SSLPs.