PROTEINS WITH SELECTED SEQUENCES FOLD INTO UNIQUE NATIVE CONFORMATION

Authors
Citation
Ei. Shakhnovich, PROTEINS WITH SELECTED SEQUENCES FOLD INTO UNIQUE NATIVE CONFORMATION, Physical review letters, 72(24), 1994, pp. 3907-3910
Citations number
22
Categorie Soggetti
Physics
Journal title
ISSN journal
00319007
Volume
72
Issue
24
Year of publication
1994
Pages
3907 - 3910
Database
ISI
SICI code
0031-9007(1994)72:24<3907:PWSSFI>2.0.ZU;2-H
Abstract
We design sequences of 80-monomer model protein which provide very low energy in the target (''native'') structure. Then the designed sequen ce is subjected to lattice Monte Carlo simulation of folding. In all r uns model protein folded from random coil to the unique native conform ation, effectively ''solving'' the multiple minima problem. These resu lts suggest that thermodynamically oriented selection of sequences whi ch makes the native conformation a pronounced deep minimum of energy s olves the problem of kinetic accessibility of this conformation as wel l.