Mp. Dube et al., HEREDITARY SPASTIC PARAPLEGIA - LOD-SCORE CONSIDERATIONS FOR CONFIRMATION OF LINKAGE IN A HETEROGENEOUS TRAIT, American journal of human genetics, 60(3), 1997, pp. 625-629
Hereditary spastic paraplegia (HSP) is a degenerative disorder of the
motor system, defined by progressive weakness and spasticity of the lo
wer limbs. HSP may be inherited as an autosomal dominant (AD), autosom
al recessive, or an X-linked trait. AD HSP is genetically heterogeneou
s, and three loci have been identified so far: SPG3 maps to chromosome
14q, SPG4 to 2p, and SPG4a to 15q. We have undertaken linkage analysi
s with 21 uncomplicated AD families to the three AD HSP loci. We repor
t significant linkage for three of our families to the SPG4 locus and
exclude several families by multipoint linkage. We used linkage inform
ation from several different research teams to evaluate the statistica
l probability of linkage to the SPG4 locus for uncomplicated AD HSP fa
milies and established the critical LOD-score value necessary for conf
irmation of linkage to the SPG4 locus from Bayesian statistics. In add
ition, we calculated the empirical P-values for the LOD scores obtaine
d with all families with computer simulation methods. Power to detect
significant linkage, as well as type I error probabilities, were evalu
ated. This combined analytical approach permitted conclusive linkage a
nalyses on small to medium-size families, under the restrictions of ge
netic heterogeneity.