S. Tomic et al., SYNTHESIS AND CONFORMATIONAL-ANALYSIS OF 2-(INDOL-3-YL)ETHYL ALPHA-L-ARABINOPYRANOSIDE AND ITS 2,3,4-TRI-O-ACETYL DERIVATIVE, Carbohydrate research, 259(2), 1994, pp. 175-190
2-(Indol-3-yl)ethyl alpha-L-arabinopyranoside (5) was prepared by Koni
gs-Knorr condensation of the aglycon alcohol with 2,3,4-O-acetyl-beta-
L-arabinopyranosyl bromide, followed by O-deacetylation. The structure
of the per-O-acetylated derivative (3) was determined. The crystals o
f 3 are trigonal, space group P3(1)21 with a = 8.367(4) Angstrom, c =
53.34(2) Angstrom, and Z = 6. The conformational analysis is based on
the results obtained from X-ray structure analysis (3), H-1{H-1}NOE me
asurements (3), and such computational chemistry methods as molecular
mechanics and molecular dynamics simulations (5). The alpha-L-arabinop
yranose ring is in a C-4(1) chair. Theoretical conformational analysis
has been focused on the most flexible part of the molecule defined by
four torsion angles about bonds which connect the carbohydrate residu
e and the indole nucleus. The conformer observed in the solid state is
one of several possible forms indicated by molecular mechanics and mo
lecular dynamics. The most probable forms are identified. In all obser
ved conformers, the molecule studied maintains the indole ring approxi
mately perpendicular to the side chain, which may be one of the prereq
uisites for bioactivity.