Acetyl-coenzyme A carboxylase (ACCase) catalyzes the formation of malo
nyl-coenzyme A, which is used in the plastid for fatty acid synthesis
and in the cytosol for several pathways including fatty acid elongatio
n and flavonoid synthesis. Two overlapping Arabidopsis genomic clones
were isolated and sequenced to determine the entire ACCase-coding regi
on. Thirty introns with an average size of 94 bp were identified by co
mparison with an alfalfa ACCase cDNA sequence. The 10-kb Arabidopsis A
CCase gene encodes a 251-kD polypeptide, which has 80% amino acid sequ
ence identity with alfalfa ACCase and about 40% identity with ACCase o
f rat, chicken, yeast, and the diatom Cyclotella. No chloroplast trans
it peptide sequence was observed, suggesting that this Arabidopsis gen
e encodes a cytosolic ACCase isozyme. ACCase gene transcripts were det
ected by RNase protection assays in Arabidopsis root, leaf, silique, a
nd seed. Genomic DNA blot analysis revealed the presence of a second r
elated Arabidopsis ACCase gene.