The characterization of unfolded and partly folded states of proteins
is central to understanding protein stability and folding, as well as
providing a basis for protein design. The four helix bundle-protein in
terleukin-4 undergoes an unfolding transition at low ph. Using heteron
uclear nuclear magnetic resonance methods we show that following this
transition the protein retains a highly ordered hydrophobic core in wh
ich most, but not all, of the secondary structure is preserved. Extens
ive disorder exists, however, in regions of polypeptide chain linking
the structural elements which make up this core. We suggest that this
'highly ordered molten globule' could be indicative of the type of str
uctures occurring late in protein folding processes, in contrast to mo
re disordered 'molten globules' which relate to early folding intermed
iates.