The effect of DNA on the activity of human O-6-alkylguanine-DNA alkylt
ransferase was investigated by using O-6-benzylguanine as a substrate
or inhibitor. The sensitivity of the alkyltransferase to inactivation
by O-6-benzylguanine was increased by addition of calf thymus DNA. In
order to investigate this phenomenon in more detail, the ability of th
e alkyltransferase to convert O-6-benzyl[8-H-3]guanine to [8-H-3]guani
ne was measured. The rate of guanine production was increased about 6-
fold by addition of DNA. The effect of DNA was completely abolished by
addition of 0.2 M NaCl, which had no effect on the reaction in the ab
sence of DNA. When a mutant P140A alkyltransferase, which is known to
be less sensitive to inactivation by O-6-benzylguanine presumably as a
result of steric hindrance, was used, the rate of reaction was increa
sed by a considerably larger amount, about 16-fold. Oligodeoxynucleoti
des were able to stimulate the production of guanine from O-6-benzylgu
anine. Single-stranded oligodeoxynucleotides were as effective as doub
le-stranded, and a maximal stimulation was obtained with a 12-mer. The
se results demonstrate that the alkyltransferase binds to a region of
DNA covering at most 12 bases and undergoes a conformational change wh
ich facilitates the reaction of adducts at the O-6-position of guanine
with the cysteine acceptor site on the protein. When O-6-benzyl[8-H-3
] deoxyguanosine was used as a substrate, the addition of DNA decrease
d the rate of formation of 2'-deoxy[8-H-3]guanosine. Inactivation of t
he alkyltransferase by O-6-benzyldeoxyguanosine was also inhibited by
DNA addition. This suggests that binding of the deoxynucleoside alone
is not sufficient to cause the conformational change needed for activa
tion and that the presence of DNA either interferes with the ability t
o bind O-6-benzyldeoxyguanosine or does not favor the reaction with th
is substrate. These results may explain why O-6-benzylguanine is a bet
ter inactivator of cellular alkyltransferase than its deoxynucleoside.