COMPUTATIONAL CONFORMATIONAL-ANALYSIS OF NEURAL MEMBRANE-LIPIDS - DEVELOPMENT OF FORCE-FIELD PARAMETERS FOR PHOSPHOLIPIDS USING SEMIEMPIRICAL MOLECULAR-ORBITAL CALCULATIONS

Citation
Ay. Jin et al., COMPUTATIONAL CONFORMATIONAL-ANALYSIS OF NEURAL MEMBRANE-LIPIDS - DEVELOPMENT OF FORCE-FIELD PARAMETERS FOR PHOSPHOLIPIDS USING SEMIEMPIRICAL MOLECULAR-ORBITAL CALCULATIONS, Canadian journal of chemistry, 72(6), 1994, pp. 1596-1604
Citations number
48
Categorie Soggetti
Chemistry
ISSN journal
00084042
Volume
72
Issue
6
Year of publication
1994
Pages
1596 - 1604
Database
ISI
SICI code
0008-4042(1994)72:6<1596:CCONM->2.0.ZU;2-P
Abstract
MM2 force field parameters for phospholipids were developed. These par ameters - MM2(Lipid) - were employed in energy-minimization calculatio ns (using crystal structures as starting conformations) on four phosph olipids: dimyristoylphosphatidylglycerol, dilauroylphosphatidyl-N,N-di methylamine, 1,2-dilauroyl-dl-phosphatidylethanolamin and deoxylysopho sphatidylcholine. After minimization, slight conformational changes we re seen in the hydrocarbon chains, while greater change was seen at th e head group. The diacylglycerol backbone of the energy-minimized stru ctures exhibited conformations corresponding to experimentally observe d conformations. The energy minimization of a randomly and significant ly altered geometry of 1,2-dilauroyl-dl-phosphatidylethanolamine resul ted in a head group conformation that closely agreed with ab initio th eoretical calculations. The utility of AM1 in molecular mechanics para meterization was demonstrated.