PHASE-DIAGRAM OF A MODEL PROTEIN-DERIVED BY EXHAUSTIVE ENUMERATION OFTHE CONFORMATIONS

Citation
A. Dinner et al., PHASE-DIAGRAM OF A MODEL PROTEIN-DERIVED BY EXHAUSTIVE ENUMERATION OFTHE CONFORMATIONS, The Journal of chemical physics, 101(2), 1994, pp. 1444-1451
Citations number
29
Categorie Soggetti
Physics, Atomic, Molecular & Chemical
ISSN journal
00219606
Volume
101
Issue
2
Year of publication
1994
Pages
1444 - 1451
Database
ISI
SICI code
0021-9606(1994)101:2<1444:POAMPB>2.0.ZU;2-Z
Abstract
An understanding of the various states available to a polypeptide chai n is important for a description of the protein folding process. We us e a 16-monomer chain on a two-dimensional square lattice to model a pr otein. This makes it possible to enumerate all self-avoiding conformat ions from which any equilibrium thermodynamic quantity can be calculat ed. By varying the external conditions of temperature and average attr action, we construct a phase diagram for the model protein. It is foun d to have an extended coil state, a homopolymer-like disorganized glob ule state, and an organized frozen globule state that corresponds to t he lowest energy (native) conformation. The exact model results agree well with analytical heteropolymer theory.