Binding of a multiprotein complex to a 5' exon inhibitory element appe
ars to repress splicing of the Drosophila P-element third intron (IVS3
) in the soma. We have purified 97- and 50-kD proteins that interact s
pecifically with the inhibitory element using RNA affinity chromatogra
phy. Antibodies specific for the 97-kD protein relieve inhibition of I
VS3 splicing in somatic extracts, providing direct evidence that inhib
ition requires this protein, P-element somatic inhibitor (PSI). We ide
ntify the 50-kD protein as hrp48, a protein similar to the mammalian s
plicing factor hnRNP A1, and show that hrp48 recognizes specific nucle
otides in a pseudo-5' splice site within the inhibitory element. The r
esults indicate that PSI is an alternative splicing factor that regula
tes tissue-specific splicing, probably through interactions with gener
ally expressed factors such as hrp48.