Methods for the analysis of domoic acid (DA) based upon capillary elec
trophoresis (CE) combined with UV absorbance detection were investigat
ed. DA could be analyzed using bare fused-silica capillaries in either
the cationic or anionic mode with acidic or basic buffer systems, res
pectively. Highest performance, in terms of both separation efficiency
and analysis time, was achieved with phosphate or berate buffers at a
pH of approximately 9. The addition of beta-cyclodextrin to the berat
e buffer permitted a separation of DA and several of its isomers (isod
omoic acids) that was superior to that achieved with liquid chromatogr
aphy (LC). The optimum background electrolyte for the separation was 2
2.5 mM sodium tetraborate at pH 9.2 with 20 mM beta-cyclodextrin. In a
ddition, an extraction and clean-up procedure was developed and tested
with mussels, clams and anchovies. Aqueous methanol extraction of sam
ples followed by a tandem strong anion and strong cation exchange clea
nup provided an extract that was completely compatible with CE analysi
s. A mass detection limit of 3 pg of DA injected and a method detectio
n limit of 150 ng/g in tissues could be achieved. Comparison with LC s
howed that comparable precision and accuracy could be attained by the
two techniques.