Multiple sources of evidence show that the skuas (Aves: Stercorariidae
) are a monophyletic group, closely related to gulls (Laridae). On mor
phological and behavioural evidence the Stercorariidae are divided int
o two widely divergent genera, Catharacta and Stercorarius, consistent
with observed levels of nuclear and mitochondrial gene divergence. Ca
tharacta skuas are large-bodied and with one exception breed in the So
uthern Hemisphere. Stercorarius skuas (otherwise known as jaegers) are
smaller bodied and breed exclusively in the Northern Hemisphere. Evid
ence from both mitochondrial and nuclear genomes and from ectoparasiti
c lice (Insecta: Phthiraptera) shows that the Pomarine skua, S. pomari
nus, which has been recognized as being somewhat intermediate in certa
in morphological and behavioural characteristics, is much more closely
related to species in the genus Catharacta, especially to the Norther
n Hemisphere-breeding Great skua, C. skua, than it is to the other two
Stercorarius skuas, the Arctic skua, S. parasiticus and the Longtaile
d skua, S. longicaudus. Three possible explanations that might account
for this discordant aspect of skua phylogeny are explored. These invo
lve (i) the segregation of ancestral polymorphism, (ii) convergent evo
lution of morphology and behaviour or (iii) inter-generic hybridizatio
n. The available evidence from both nuclear and mitochondrial genomes
does not exclude any of these hypotheses. Thus, resolution of this eni
gma of skua phylogeny awaits further work.