A yeast nuclear protein that binds to tRNA was identified using a RNA
mobility shift assay. Northwestern blotting and N-terminal sequencing
experiments indicate that this tRNA-binding protein is identical to zu
otin which has previously been shown to bind to Z-DNA [(1992) EMBO J.
11, 3787-3796]. Labeled tRNA and poly(dG-m(5)dC) stabilized in the Z-D
NA form identify the same protein on a Northwestern blot. In a gel ret
ardation assay poly(dG-m(5)dC) in the Z-form strongly diminishes the b
inding of tRNA to zuotin. These studies establish that zuotin is able
to bind to both tRNA and Z-DNA. Zuotin may be transiently associated w
ith tRNA in the nucleus of yeast cells and play a role in its processi
ng or transport to the cytoplasm.