We have examined the adsorption of thymine on (111), (100), and (210)
gold single-crystal surfaces, The adsorption behavior on these three s
urfaces has been investigated by classical electrochemical methods lik
e cyclic voltammetry and capacitance-potential measurements. Additiona
lly in situ scanning tunneling microscopy (STM) and ex situ photoelect
ron spectroscopy (XPS) measurements have been performed for the adsorp
tion of thymine on the (111) surface. The capacitance measurements as
well as cyclic voltammetry investigations show the three adsorption st
ates of thymine on all Au electrodes, The first adsorption state refer
s to a random adsorption of thymine molecules at negative surface char
ges. The second state can be characterized as a condensed but weakly a
dsorbed adlayer on the (100) and (111) crystals, whereas a noncondense
d state has been found on the (210) surface. The condensed thymine fil
m is stabilized mainly by hydrogen bonding. High-resolution STM images
for this film on the (111) electrode point to an ordered adlayer with
a unit cell which is incommensurate with the underlying Au surface. T
he images indicate flat adsorbing thymine molecules in this state. The
third adsorption state is characterized by charge transfer from depro
tonated thymine molecules to the gold surface, XPS data show one chemi
cally modifed nitrogen atom for the chemisorbed thymine film. This ads
orption state shows a commensurate 2 root 3 x 2 root 3 overstructure i
n the STM image. The STM images are interpreted by stacks of adsorbed
thymine molecules with the molecular plane perpendicular to the surfac
e. The stacks are connected by coadsorbed water molecules. The molecul
es are bound by a deprotonated nitrogen to the surface.