The Ah-receptor (AHR) is a ligand activated transcription factor that
mediates the biological effects of agonists such as 2,3,7,8-tetrachlor
odibenzo-p-dioxin. Upon binding agonists, the AHR dimerizes with a str
ucturally related protein known as ARNT and this heterodimer then bind
s cognate enhancer elements and activates the expression of target gen
es. In this report we describe the cloning of the rat AHR cDNA and a f
ragment of the rat ARNT cDNA for use as probes in ribonuclease protect
ion analysis. Ribonuclease protection analysis indicated that the rat
AHR mRNA is expressed at the highest levels in the lung > thymus > kid
ney > liver while lower levels were expressed in heart and spleen. The
rat AHR and ARNT mRNAs were expressed in a largely coordinate manner
across the eight tissues examined with the exception of the placenta w
here AHR levels were relatively low compared to ARNT. In these experim
ents, a rare splice variant of the AHR was cloned that encoded a prote
in with a deletion in the ligand binding domain. In vitro expression s
tudies demonstrated that in contrast to the full length AHR, the splic
e variant did not bind ligand nor did it bind to a cognate enhancer el
ement in the presence of ARNT.