SYMPLECTIC INTEGRATORS FOR LARGE-SCALE MOLECULAR-DYNAMICS SIMULATIONS- A COMPARISON OF SEVERAL EXPLICIT METHODS

Citation
Sk. Gray et al., SYMPLECTIC INTEGRATORS FOR LARGE-SCALE MOLECULAR-DYNAMICS SIMULATIONS- A COMPARISON OF SEVERAL EXPLICIT METHODS, The Journal of chemical physics, 101(5), 1994, pp. 4062-4072
Citations number
41
Categorie Soggetti
Physics, Atomic, Molecular & Chemical
ISSN journal
00219606
Volume
101
Issue
5
Year of publication
1994
Pages
4062 - 4072
Database
ISI
SICI code
0021-9606(1994)101:5<4062:SIFLMS>2.0.ZU;2-J
Abstract
We test the suitability of a variety of explicit symplectic integrator s for molecular dynamics calculations on Hamiltonian systems. These in tegrators are extremely simple algorithms with low memory requirements , and appear to be well suited for large scale simulations. We first a pply all the methods to a simple test case using the ideas of Berendse n and van Gunsteren. We then use the integrators to generate long time trajectories of a 1000 unit polyethylene chain. Calculations are also performed with two popular but nonsymplectic integrators. The most ef ficient integrators of the set investigated are deduced. We also discu ss certain variations on the basic symplectic integration technique.