W. Guba et al., COMBINED APPROACH OF NMR AND MOLECULAR-DYNAMICS WITHIN A BIPHASIC MEMBRANE MIMETIC - CONFORMATION AND ORIENTATION OF THE BRADYKININ ANTAGONIST HOE-140, Journal of the American Chemical Society, 116(17), 1994, pp. 7532-7540
The conformation of the highly potent bradykinin antagonist Hoe 140 yp
(3)-Gly(4)-Thi(5)-Ser(6)-D-Tic(7)-Oic(8)-Arg(9)) in a membrane-like su
rrounding was determined via NMR spectroscopy in SDS micelles and rest
rained molecular dynamics (MD) simulations in the novel biphasic membr
ane mimetic H2O/CCl4. The conformation is characterized by a beta II'-
turn and a beta II-turn comprising residues 6-9 and 2-5, respectively,
with the three arginine side chains anchored in the water phase and t
he rest of the molecule positioned in the hydrophobic phase. Selective
solvation of the hydroxylated amino acids Hyp(3) and Ser(6) was exami
ned by radial distribution functions, and both the orientation and the
dynamics at the interface were analyzed by calculating the time cours
e and the probability distribution of diagnostic atoms relative to the
density profile of H2O/CCl4. Additional simulations were performed wi
th all ionizable groups treated as charged to demonstrate the unfoldin
g in pure H2O and the reorientation of Hoe 140 in the biphasic system
after completely embedding the refined conformation in the apolar phas
e.