Protozoan parasites of the phylum Apicomplexa contain three genetic el
ements: the nuclear and mitochondrial genomes characteristic of virtua
lly all eukaryotic cells and a 35-kilobase circular extrachromosomal D
NA. In situ hybridization techniques were used to localize the 35-kilo
base DNA of Toxoplasma gondii to a discrete organelle surrounded by fo
ur membranes. Phylogenetic analysis of the tufA gene encoded by the 35
-kilobase genomes of coccidians T. gondii and Eimeria tenella and the
malaria parasite Plasmodium falciparum grouped this organellar genome
with cyanobacteria and plastids, showing consistent clustering with gr
een algal plastids. Taken together, these observations indicate that t
he Apicomplexa acquired a plastid by secondary endosymbiosis, probably
from a green alga.