Cla elements are a family of tandem repetitive DNA sequences present i
n the genome of several Chironomus species. Interspersed clusters of C
la elements are widely distributed all over the chromosomes in C. thum
mi thummi, while they seem to be limited to the centromeric regions in
the closely related subspecies C. t. piger. Here we present molecular
evidence that this differential distribution is due to a transpositio
n of Cla elements during evolution of the C. t. thummi genome. We have
cloned a ''filled'' integration site (containing a Cla element cluste
r) from C. t. thummi and the corresponding ''empty'' genomic site from
C. t. piger and other related species. The comparison shows that tand
em repetitive elements may be mobilized together with flanking DNA.