Phylogenetic relationships were inferred from parsimony and distance a
nalyses of nuclear small-subunit ribosomal DNA sequences taken from 14
species representing 8 Of the 11 extant genera in the Dasycladales. O
f 1733 aligned positions, 412 (23.8%) were variable and 251 (61%) of t
hose were phylogenetically informative within the Dasycladales. Second
ary structure was analyzed and taken into account during all phases of
data analysis. Robustness of the trees was assessed using bootstrap a
nalysis and g, statistics of tree-length decay. Strongly supported bra
nches were robust to all methods of analysis regardless of weighting s
chemes used. The secondary structure of the 18S within the Dasycladale
s agrees with that of other green algae with the exception of a shared
deletion in stemloop E10-1 (ca. 13 nucleotides long), which provides
additional support for the uniqueness of this monophyletic group. A mo
lecular clock was calibrated from the dasyclad fossil record and sugge
sts a radiation of the Acetabulariaceae at 120 +/- 3O million years (M
a) ago and the Dasycladaceae 215 +/- 40 Ma ago. The split of the two l
ineages from a shared ancestor is estimated at 265 +/- 50 Ma ago. With
in the Dasycladaceae, Neomeris and Cymopolia are sister taxa, as are B
atophora and Chlorocladus. Bornetella groups with the Neomeris and Cym
opolia clade in 78% of the bootstrap replicates. Re Relationships amon
g the Acetabulariaceae show that Acetabularia and Polyphysa do not for
m monophyletic groups as presently circumscribed. No evidence indicate
s that Acicularia is the oldest genus. Halicoryne, Chalmasia, and Dasy
cladus were not included in the analysis. Molecular data provide afres
h background perspective from which to discuss the evolution of one of
the most ancient lineages of green plants.