A PCR-based method that determines VDJ junction size patterns in 24 hu
man TCR VP subfamilies was used to analyze T cells infiltrating sequen
tial malignant melanoma biopsies for the presence of clonal expansions
. Infiltrating T cell populations were found to present clonal expansi
ons over a more or less complex polyclonal background. Two clones from
a single patient were sequenced and detected in three different tumor
sites (skin biopsies), whereas only one of them was also present in p
eripheral blood. Biopsies from this patient did not show major reperto
ire changes during in vivo IL-2 treatment. In contrast, in biopsies fr
om a second patient, the expression of all the detected V beta subfami
lies was increased and a larger number of clones expanded, probably as
a result of therapy. A similar evolution was found among infiltrating
T cells cultured in vitro from a third patient for several weeks in t
he presence of IL-2, where the largely polyclonal repertoire of fresh
T cells (from invaded lymph nodes) was dramatically reduced to mainly
clonal expansions in all V beta subfamilies detected. The high resolut
ion method used here enables a rapid, comprehensive, qualitative, and
semiquantitative description of the T cell repertoire of heterogeneous
cell populations. Its use in conjunction with a functional analysis o
f clones detected within these populations should provide a better und
erstanding of the evolution of the T cell repertoire among tumor-infil
trating lymphocytes during the progression of the disease and as a res
ponse to immunotherapy.