Sequential electrophoresis, using three different buffer systems on ce
llulose acetate gels, was used to characterize the allelic variation f
or esterase-2 in two populations of D. buzzatii in Australia that are
separated by 550 km. Twenty-five alleles were detected, of which nine
were unique to one population, eight unique to the other, and only eig
ht were common to both populations. Allele frequencies within each pop
ulation were significantly different between the two major chromosome
sequences (standard and j inversion), and for each chromosome sequence
allele frequencies were significantly different between populations.
Observed allelic frequency distributions were not significantly differ
ent from those predicted for selective neutrality using the homozygosi
ty test statistic. However, estimates of the effective sizes of the po
pulations derived from their observed differentiation, together with t
he history of the species in Australia, provide support for some form
of balancing selection affecting at least some of the alleles.