Apomyoglobin, myoglobin lacking the haem group, is a natural intermedi
ate in biosynthesis of myoglobin, and has some structural features in
common with the haem-containing native state. Unfolding or refolding s
tudies of apomyoglobin have identified a molten globule intermediate a
t acid ph. We show here that both the native state of apomyoglobin and
the molten globule intermediate have highly plastic structures. Subst
itution of single amino acids on the surface or in the interior of hel
ices in the native protein produce dramatic changes in the helix conte
nt and tryptophan emission of apomyoglobin at neutral and acidic ph. T
he signals from the intermediate and native apomyoglobin correlate clo
sely suggesting that apomyoglobin itself has a molten globule-like cha
racter its structure representing a population of interconverting subs
tates rather than a fixed conformation.