This paper describes a detailed sequence analysis of the omega-secalin
gene array at the Sec-1 locus on the short arm of chromosome 1 of rye
. The analysis shows that the genes are separated by 8 kb of spacer se
quence and that the gene/spacer units are arranged in a head to tail f
ashion. The boundaries of the array are identified, and a fragment con
taining the majority of the genes in the array is separated by PFG ana
lysis. The sequence data of one 9.2 kb gene unit have been determined,
and because of the similarity of the gene units within the array thes
e data provide a detailed sequence analysis of 140 kb of the Sec-1 loc
us. Fluorescence in situ hybridization, using lambda clones isolated f
or the structural analysis, identifies the position of the array on th
e rye chromosomes relative to the 5S rRNA genes.