Mouse granzyme B is the prototypic member of a subfamily of serine pro
teinases expressed in cytolytic lymphocytes. Molecular modelling of gr
anzyme B indicated that the side chain of Arg 208 partially fills the
specificity pocket, thus predicting the preference of this enzyme for
substrates containing acidic side chains, a feature unique among eukar
yotic serine proteinases. Replacement of Arg 208 with glycine results
in an enzyme lacking this activity, but which is able to hydrolyze hyd
rophobic substrates. These results demonstrate unequivocally that the
substrate preference of granzyme B is determined by a positive charge
in the specificity pocket and also represent one of the few examples o
f rational and efficient alteration of serine proteinase substrate-spe
cificity following a single amino acid substitution.