Sequential in vivo MRI studies of experimental spinal cord injuries (S
CI) were performed using a three-dimensional implementation of the FAT
E (Fast low-Angle spin echo sequence with short TE) sequence. MRI-obse
rved pathology was quantified using a multispectral segmentation algor
ithm. Neurological analysis was performed on the same animals concurre
ntly, in addition to end-point histology, for comparison with quantita
tive MRI results. These studies suggest that it is possible to use MRI
to detect the onset of secondary injury in the spinal cord. The data
also indicate that early detection of MRI-visible pathology may provid
e the necessary markers for predicting the long-term level of neurolog
ic deficit.