Antithrombin III is the most important inhibitor of coagulation protei
nases such as thrombin and factor Xa. Inherited deficiency of antithro
mbin III is a well recognised risk factor for the early development of
venous thromboembolism. The gene for antithrombin III is located at c
hromosome 1q 23-25 and its structural organisation has been described.
A database of mutations of the antithrombin III gene has been compile
d and a recent update lists 184 entries. These entries are listed acco
rding to subtype of deficiency and to nucleotide sequence number. Ther
e are 68 reports of type I 'classical' and 116 reports of type II 'var
iant' deficiencies. This summary considers the entries in terms of the
number of unique molecular events, the nature of the genetic defects
and the role of CpG dinucleotides in deficiency. Sample listings of ty
pe I and II deficiency entries are provided.